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Bam t #53

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merged 17 commits into from
Aug 18, 2023
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1,002 changes: 1,002 additions & 0 deletions example.sam

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13 changes: 13 additions & 0 deletions src/FastqStats.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -154,3 +154,16 @@ FastqStats::summarize() {
}
}


void
FastqStats::adjust_tile_maps_len() {
for (auto it = begin(tile_position_quality);
it != end(tile_position_quality); it++) {
it->second.resize(max_read_length); // Always increase space
}
for (auto it = begin(tile_position_count);
it != end(tile_position_count); it++) {
it->second.resize(max_read_length); // Always increase space
}
}

2 changes: 2 additions & 0 deletions src/FastqStats.hpp
Original file line number Diff line number Diff line change
Expand Up @@ -236,6 +236,8 @@ struct FastqStats {

void summarize();

void adjust_tile_maps_len();

// Given an input fastqc_data.txt file, populate the statistics with it
void read(std::istream &is);
};
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