Attempt to fix issue #59 #61
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…ence within a BAM record (bam1_t) and to reverse the quality scores in a record.
…on as a BAM record (bam1_t) is read, if it is marked as reversed with the bam_is_rev function declared in sam.h, the sequence is reverse complemented, the quality scores are reversed, and the record itself is marked as not reversed.
…left in and fixing code formatting
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Strategy: For BAM format reads that are reversed in the BAM file are now reverse complemented and their quality score string is reversed immediately, which should prevent issues related to strand. Initial tests show this working for both quality scores and nucleotide distributions.