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Attempt to fix issue #59 #61

Merged
merged 4 commits into from
Jul 15, 2024
Merged

Attempt to fix issue #59 #61

merged 4 commits into from
Jul 15, 2024

Commits on Jul 15, 2024

  1. src/StreamReader.cpp: whitespace removed at ends of lines

    @andrewdavidsmith
    andrewdavidsmith committed Jul 15, 2024
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  2. src/StreamReader.cpp: adding functions to reverse-complement the sequ… 

    …ence within a BAM record (bam1_t) and to reverse the quality scores in a record.
    @andrewdavidsmith
    andrewdavidsmith committed Jul 15, 2024
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  3. src/StreamReader.cpp: in the read_entry function for BamReader, as so… 

    …on as a BAM record (bam1_t) is read, if it is marked as reversed with the bam_is_rev function declared in sam.h, the sequence is reverse complemented, the quality scores are reversed, and the record itself is marked as not reversed.
    @andrewdavidsmith
    andrewdavidsmith committed Jul 15, 2024
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  4. src/StreamReader.cpp: Removing an old debug print statement that was … 

    …left in and fixing code formatting
    @andrewdavidsmith
    andrewdavidsmith committed Jul 15, 2024
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