Rename block-aligner-c to block_aligner_c to fix rust 1.79 breaking f…

…oldseek

CMakeLists.txt

@@ -77,7 +77,7 @@ corrosion_import_crate(
 )
 include_directories(lib/block-aligner/c)
 if(EMSCRIPTEN)
-    corrosion_add_target_local_rustflags(block-aligner-c "-Clink-args=--no-entry -sRELOCATABLE=1")
+    corrosion_add_target_local_rustflags(block_aligner_c "-Clink-args=--no-entry -sRELOCATABLE=1")
 endif()
 
 set(CANDLE_FEATURE "")

lib/block-aligner/c/Cargo.toml

@@ -1,7 +1,7 @@
 # Minimal Cargo.toml to avoid downloading dependencies.
 
 [package]
-name = "block-aligner-c"
+name = "block_aligner_c"
 version = "0.4.0"
 authors = ["c0deb0t <[email protected]>"]
 edition = "2018"

lib/block-aligner/c/Makefile

@@ -7,7 +7,7 @@ all: example align_prefix align_local
 
 block_aligner:
 	cargo build --release --features simd_avx2 --offline
-	cbindgen --config cbindgen.toml --crate block-aligner-c --output block_aligner.h --quiet .
+	cbindgen --config cbindgen.toml --crate block_aligner_c --output block_aligner.h --quiet .
 
 example: block_aligner example.c
 	$(CC) $(CFLAGS) -o example example.c

lib/block-aligner/c/cbindgen.toml

@@ -9,4 +9,4 @@ after_includes = "#define ALIGNED(n) __attribute__ ((aligned(n)))"
 aligned_n = "ALIGNED"
 
 [parse]
-expand = ["block-aligner-c"]
+expand = ["block_aligner_c"]

src/CMakeLists.txt

@@ -13,7 +13,7 @@ add_library(foldseek-framework
         FoldseekBase.cpp
 )
 mmseqs_setup_derived_target(foldseek-framework)
-target_link_libraries(foldseek-framework gemmiwrapper 3di pulchra kerasify tmalign block-aligner-c)
+target_link_libraries(foldseek-framework gemmiwrapper 3di pulchra kerasify tmalign block_aligner_c)
 if(ENABLE_PROSTT5)
         target_link_libraries(foldseek-framework cprostt5)
         target_compile_definitions(foldseek-framework PUBLIC -DHAVE_PROSTT5=1)