A Python Framework for Modeling and Analysis of Signaling Systems
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Updated
Aug 5, 2024 - Python
A Python Framework for Modeling and Analysis of Signaling Systems
A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
FindSim - A Framework for Integrating Neuronal Data and Signaling Models
Patient-Specific Modeling in Python
Tropical Sensitivity Scores
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
Another Genetic Circuit Transcriber
Julia interface to BioMASS
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
R package associated with paper "Component response rate variation underlies the stability of highly complex finite systems" (Duthie, AB. 2020. Sci. Rep. 10:8296, https://www.nature.com/articles/s41598-020-64401-w). This repository contains all manuscript text and supplemental information, and all code for recreating analyses.
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
This repository is used to determine the settling time of a given biochemical reaction network using the approach described in the manuscript "An Automated Model Reduction Method for Biochemical Reaction Networks" published in "Symmetry".
Context-sensitive creation of kinetic equations in biochemical networks
MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.
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