Graph-based algorithm for generating peptide tags from MS/MS data
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Updated
Feb 12, 2024 - Java
Graph-based algorithm for generating peptide tags from MS/MS data
Deep Learning for Chem
Detection of motifs co-occurrence in a single ChIP-seq dataset
This repository holds the code and notes during the use of Casanovo as part of my Research Project, as well as links to resources used as part of the Metaproteomic Analysis of my samples.
A fast and accurate tool that identifies Mendelian violations in family trios. Resolve variant representation issues in VCF files
De novo identification of LTR retrotransposons
Statistical models for finding de novo recurrence and compound heterozygosity across rare disease patient cohorts
Tortoise is the CPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.
HARE is the GPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.
acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change counts, lengths, and presence/absence at CpG sites; and characteristics of parental age and number of DNVs.
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
A bare metal Python library for building and manipulating protein molecular structures
Graphical user interface for de novo sequencing of tandem mass spectra
Implementation of the paper - Automatic chemical design using a data-driven continuous representation of molecules
Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
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