A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.

A library for working with phylogenetic and population genetic data.

Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

Adapted chi-squared and CMH test to evolve and resequenced data. Includes drift and pool sequencing variance in the tests

Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

A tool to convert poolseq VCF to allele frequencies.