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48 Open 129 Closed
48 Open 129 Closed
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Issues list

API for singleton phasing
#446 opened Dec 13, 2024 by hyanwong
Node times remain biased after multiple EP rounds (and bias depends on number of nodes)
#444 opened Dec 11, 2024 by hyanwong
4
Reduce import time
#438 opened Nov 11, 2024 by nspope
1
13
Comparison to "Threads"
#430 opened Aug 25, 2024 by hyanwong
1
Future work: time-variable split_disjoint_nodes routine
#402 opened Jun 5, 2024 by hyanwong
Inconsistent parameter naming for removing flanks vs tsinfer
#398 opened Jun 5, 2024 by hyanwong
sample_as_parent in variational_gamma
#394 opened Jun 4, 2024 by hyanwong
3
Do not overwrite node metadata once tsinfer has set a schema
#386 opened Jun 4, 2024 by hyanwong
DeprecationWarning for scipy: quadpack
#384 opened Jun 4, 2024 by hyanwong
2
Add some more evaluation scripts
#379 opened May 13, 2024 by hyanwong
Break tsinfer polytomies using mutational density
#363 opened Jan 11, 2024 by hyanwong
4
Investigate effect of polytomies / topological uncertainty on posteriors
#359 opened Jan 8, 2024 by hyanwong
15
Test ability to detect wrongly polarised ancestral states in tsinfer
#347 opened Dec 5, 2023 by hyanwong
Add iterative approach to the inside_outside method
#325 opened Oct 9, 2023 by hyanwong
Constraining multiple nodes to be at the same time?
#316 opened Sep 21, 2023 by hyanwong
3
Adjust edge spans according to exclusion mask
#315 opened Sep 10, 2023 by nspope
Move CladeMap and associated functions into tscompare repo
#311 opened Aug 25, 2023 by hyanwong
Add test case for Loopy ARG
#304 opened Jul 24, 2023 by hyanwong
1
"set_metadata" parameter
#302 opened Jul 22, 2023 by hyanwong
2
1
Comparing dates between simulated and inferred tree sequences
#301 opened Jul 22, 2023 by nspope
4
Use of, and alternatives to, to a "global" (i.e. node-agnostic) prior enhancement New feature or request
#292 opened Jul 11, 2023 by hyanwong
13
Test whether splitting the root node helps or hinders dating
#287 opened Jul 11, 2023 by hyanwong
1
Add variational method accuracy tests to test_accuracy.py
#265 opened Jun 13, 2023 by hyanwong
5
Optimize likelihood cache
#247 opened Jan 17, 2023 by hyanwong
1
Implement lightweight benchmarks
#246 opened Jan 17, 2023 by hyanwong
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