always validate intersect_regions files

uclahs-cds · Jul 20, 2023 · a0c532a · a0c532a
1 parent 82419a5
commit a0c532a
Showing 1 changed file with 5 additions and 7 deletions.
diff --git a/main.nf b/main.nf
@@ -132,14 +132,12 @@ workflow {
         file_to_validate = reference_ch
         .mix (tumor_input.tumor_bam, tumor_input.tumor_index, normal_input.normal_bam, normal_input.normal_index)
         }
-    if (params.use_intersect_regions) {
-        file_to_validate = file_to_validate.mix(
-            Channel.from(
-                params.intersect_regions,
-                params.intersect_regions_index
-                )
+    file_to_validate = file_to_validate.mix(
+        Channel.from(
+            params.intersect_regions,
+            params.intersect_regions_index
             )
-        }
+        )
     run_validate_PipeVal(file_to_validate)
     run_validate_PipeVal.out.validation_result.collectFile(
         name: 'input_validation.txt', newLine: true,