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Template-based smartSPIM-CCF registration #19

Merged
merged 16 commits into from
Jun 12, 2024
Merged

Template-based smartSPIM-CCF registration #19

merged 16 commits into from
Jun 12, 2024

Commits on May 21, 2024

  1. Initial commit

    @Di-Wang-AIND
    Di-Wang-AIND committed May 21, 2024
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Commits on May 22, 2024

  1. add align ccf annotation to brain space

    @Di-Wang-AIND
    Di-Wang-AIND committed May 22, 2024
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Commits on May 23, 2024

  1. update registration to template: combine rigid+SyN

    @Di-Wang-AIND
    Di-Wang-AIND committed May 23, 2024
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  2. update path to moved images and transforms

    @Di-Wang-AIND
    Di-Wang-AIND committed May 23, 2024
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Commits on May 24, 2024

  1. fix channel_to_register

    @Di-Wang-AIND
    Di-Wang-AIND committed May 24, 2024
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  2. fix channel_to_register

    @Di-Wang-AIND
    Di-Wang-AIND committed May 24, 2024
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Commits on May 28, 2024

  1. Merge branch 'template-based-reg' of https://github.com/Di-Wang-AIND/… 

    …aind-ccf-registration into template-based-reg
    @Di-Wang-AIND
    Di-Wang-AIND committed May 28, 2024
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  2. remove experimental files

    @Di-Wang-AIND
    Di-Wang-AIND committed May 28, 2024
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Commits on May 30, 2024

  1. upload pipeline-version main.py and doc

    @Di-Wang-AIND
    Di-Wang-AIND committed May 30, 2024
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  2. update main.py

    @Di-Wang-AIND
    Di-Wang-AIND committed May 30, 2024
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Commits on Jun 1, 2024

  1. update codes to follow aind-python standards

    @Di-Wang-AIND
    Di-Wang-AIND committed Jun 1, 2024
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Commits on Jun 3, 2024

  1. update antspyx to latest version 0.4.2

    @Di-Wang-AIND
    Di-Wang-AIND committed Jun 3, 2024
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  2. save derivative images to registration_metadata/ folder

    @Di-Wang-AIND
    Di-Wang-AIND committed Jun 3, 2024
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  3. update template_based_ccf_registration.md

    @Di-Wang-AIND
    Di-Wang-AIND committed Jun 3, 2024
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Commits on Jun 5, 2024

  1. add unit tests

    @Di-Wang-AIND
    Di-Wang-AIND committed Jun 5, 2024
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  2. update test_ccf_registration.py

    @Di-Wang-AIND
    Di-Wang-AIND committed Jun 5, 2024
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