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Add thirty models#13

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joeyshuttleworth wants to merge 30 commits intomasterCardiacModelling/markov-builder:masterfrom fix_transition_matrixCardiacModelling/markov-builder:fix_transition_matrixCopy head branch name to clipboard

+3,470-75

Commits

Commits on Oct 24, 2022

• Change default parameter handling

  joeyshuttleworth

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  be57ad5

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• Remove unnecessary line from test

  joeyshuttleworth

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• Add first 4 models. Add tests to generate .mmt and graph files

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Commits on Oct 25, 2022

• Add tests for connectedness as reversibility. Add models 4,5

  joeyshuttleworth

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Commits on Nov 1, 2022

• Fix draw_graph handling of transition rates

  joeyshuttleworth

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  0b6f9d8

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• Add more models

  joeyshuttleworth

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Commits on Apr 28, 2023

• Fix get_transition_matrix. Fix reversibility check. Add show_html switch to draw_graph

  joeyshuttleworth

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• Merge branch 'master' into fix_transition_matrix

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Commits on May 3, 2023

• Add models 11 and 30. Remove duplicated test file

  joeyshuttleworth

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• Merge branch 'fix_transition_matrix' of github.com:CardiacModelling/Markov-builder into fix_transition_matrix

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• Lint and isort

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• Update test_parameterise_rates

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• Add test_30_models.py

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• Add myokit files for testing

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• Update pytest.yml

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• Update pytest.yml

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Commits on Jun 13, 2023

• Make single quote use more consistent

  joeyshuttleworth

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• Fix indentation. Distribute trajectories according to number of trajectories

  joeyshuttleworth

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• Fix sympy depreciation warning (latex output)

  joeyshuttleworth

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• Add test for dataclass exception (must be subclass of state_attributes_class)

  joeyshuttleworth

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  fe4f333

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• Merge branch 'fix_transition_matrix' of github.com:CardiacModelling/Markov-builder into fix_transition_matrix

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• Raise TypeError not Exception

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  b6ef7da

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• Remove old, broken test output

  joeyshuttleworth

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• Fix test_bad_dataclass_exception

  joeyshuttleworth

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• Remove unnecessary checks on attribute dataclass

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• Lint

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• Add models

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Commits on Jun 16, 2023

• Add some models with HH-style gating

  joeyshuttleworth

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• Sort imports

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• Fix myokit model generation

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