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    114 repositories

    • BayesERbook

      Public
      R
      •
      Other
      •1•1•2•0•Updated Apr 19, 2025Apr 19, 2025

    • spex

      Public
      Jupyter Notebook
      •
      Other
      •0•0•1•0•Updated Apr 19, 2025Apr 19, 2025

    • spex_spatial_transcriptomics

      Public
      Jupyter Notebook
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      Other
      •0•0•0•0•Updated Apr 19, 2025Apr 19, 2025

    • spex_segmentation

      Public
      Jupyter Notebook
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      Other
      •0•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • beignet

      Public
      A standard library for biological research.
      Python
      •
      MIT License
      •5•24•32•21•Updated Apr 16, 2025Apr 16, 2025

    • gReLU

      Public
      gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
      Python
      •
      MIT License
      •32•256•21•7•Updated Apr 15, 2025Apr 15, 2025

    • jmpost

      Public
      R
      •4•17•55•1•Updated Apr 15, 2025Apr 15, 2025

    • Firmament

      Public
      Provides method to perform gene signature search
      Python
      •
      MIT License
      •0•1•0•0•Updated Apr 15, 2025Apr 15, 2025

    • spex_clustering

      Public
      Python
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      Other
      •0•0•0•0•Updated Apr 15, 2025Apr 15, 2025

    • decima

      Public
      Decima is a Python library to train sequence models on single-cell RNA-seq data.
      Jupyter Notebook
      •
      Other
      •5•33•1•0•Updated Apr 10, 2025Apr 10, 2025

    • nfnull

      Public
      Python
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      MIT License
      •0•0•0•0•Updated Apr 10, 2025Apr 10, 2025

    • spex_bundle

      Public
      PLpgSQL
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      Other
      •0•1•0•0•Updated Apr 9, 2025Apr 9, 2025

    • phase1b

      Public
      R
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      Other
      •2•5•17•0•Updated Apr 8, 2025Apr 8, 2025

    • SpatialAgent

      Public
      MIT License
      •3•71•1•0•Updated Apr 5, 2025Apr 5, 2025

    • pascient

      Public
      Jupyter Notebook
      •
      Other
      •2•12•0•0•Updated Apr 1, 2025Apr 1, 2025

    • polygraph

      Public
      Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.
      Jupyter Notebook
      •
      MIT License
      •0•28•1•0•Updated Mar 27, 2025Mar 27, 2025

    • psborrow2

      Public
      psborrow2: Bayesian Dynamic Borrowing Simulation Study and Analysis
      simulation-studybayesian-dynamic-borrowingpsborrow2r
      R
      •
      Other
      •2•18•6•2•Updated Mar 14, 2025Mar 14, 2025

    • gReLU-applications

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 13, 2025Mar 13, 2025

    • Islander

      Public
      Jupyter Notebook
      •
      MIT License
      •21•111•0•0•Updated Mar 6, 2025Mar 6, 2025

    • PerturbQA

      Public
      Python
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      Other
      •0•12•0•0•Updated Mar 4, 2025Mar 4, 2025

    • topological_PRM_for_lungHRCT

      Public
      Lung image analysis pipeline for topological PRM maps
      topological-data-analysislungcopdminkowski-functionalshrctparametric-response-mapping
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Feb 27, 2025Feb 27, 2025

    • rd2markdown

      Public
      R
      •
      Other
      •0•9•5•0•Updated Feb 27, 2025Feb 27, 2025

    • SaludLibrary

      Public
      Python
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      Other
      •1•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • BayesERtools

      Public
      R
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      Other
      •1•2•2•1•Updated Feb 21, 2025Feb 21, 2025

    • genentech.r-universe.dev

      Public
      1•0•0•0•Updated Feb 19, 2025Feb 19, 2025

    • Teal4Real

      Public
      Teal4Real - use the Teal clinical trial reporting software with Real-world Data or any other one-row-per-patient dataset (not ADaM format)
      R
      •
      MIT License
      •0•4•0•0•Updated Feb 19, 2025Feb 19, 2025

    • psborrow

      Public
      An R package for Bayesian Dynamic Borrowing. Check out the successor psborrow2: https://github.com/Genentech/psborrow2
      HTML
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      Other
      •3•0•1•1•Updated Feb 19, 2025Feb 19, 2025

    • spex_ms_job_manager

      Public
      Python
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      Other
      •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

    • scimilarity

      Public
      A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
      Python
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      Other
      •7•184•22•0•Updated Feb 18, 2025Feb 18, 2025

    • stats4phc

      Public
      Performance evaluation for the prognostic value of predictive models intended to support personalized healthcare through predictiveness curves and positive / negative predictive values.
      R
      •1•1•0•0•Updated Feb 17, 2025Feb 17, 2025