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Add algorithm to compute the free-floating Coriolis matrix #172

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122 changes: 122 additions & 0 deletions src/jaxsim/api/model.py
Original file line number Diff line number Diff line change
Expand Up @@ -871,6 +871,128 @@ def free_floating_mass_matrix(
raise ValueError(data.velocity_representation)


@jax.jit
def free_floating_coriolis_matrix(
model: JaxSimModel, data: js.data.JaxSimModelData
) -> jtp.Matrix:
"""
Compute the free-floating Coriolis matrix of the model.

Args:
model: The model to consider.
data: The data of the considered model.

Returns:
The free-floating Coriolis matrix of the model.

Note:
This function, contrarily to other quantities of the equations of motion,
does not exploit any iterative algorithm. Therefore, the computation of
the Coriolis matrix may be much slower than other quantities.
"""

# We perform all the calculation in body-fixed.
# The Coriolis matrix computed in this representation is converted later
# to the active representation stored in data.
with data.switch_velocity_representation(VelRepr.Body):

B_ν = data.generalized_velocity()

# Doubly-left free-floating Jacobian.
L_J_WL_B = generalized_free_floating_jacobian(model=model, data=data)

# Doubly-left free-floating Jacobian derivative.
L_J̇_WL_B = jax.vmap(
lambda link_index: js.link.jacobian_derivative(
model=model, data=data, link_index=link_index
)
)(js.link.names_to_idxs(model=model, link_names=model.link_names()))

L_M_L = link_spatial_inertia_matrices(model=model)

# Body-fixed link velocities.
# Note: we could have called link.velocity() instead of computing it ourselves,
# but since we need the link Jacobians later, we can save a double calculation.
L_v_WL = jax.vmap(lambda J: J @ B_ν)(L_J_WL_B)

# Compute the contribution of each link to the Coriolis matrix.
def compute_link_contribution(M, v, J, J̇) -> jtp.Array:

from jaxsim.math import Cross
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return J.T @ ((Cross.vx_star(v) @ M + M @ Cross.vx(v)) @ J + M @ J̇)

C_B_links = jax.vmap(compute_link_contribution)(
L_M_L,
L_v_WL,
L_J_WL_B,
L_J̇_WL_B,
)

# We need to adjust the Coriolis matrix for fixed-base models.
# In this case, the base link does not contribute to the matrix, and we need to zero
# the off-diagonal terms mapping joint quantities onto the base configuration.
if model.floating_base():
C_B = C_B_links.sum(axis=0)
else:
C_B = C_B_links[1:].sum(axis=0)
C_B = C_B.at[0:6, 6:].set(0.0)
C_B = C_B.at[6:, 0:6].set(0.0)

# Adjust the representation of the Coriolis matrix.
# Refer to the Ph.D. thesis of Traversaro, Section 3.6.
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match data.velocity_representation:

case VelRepr.Body:
return C_B

case VelRepr.Inertial:

n = model.dofs()
W_H_B = data.base_transform()
B_X_W = jaxsim.math.Adjoint.from_transform(W_H_B, inverse=True)
B_T_W = jax.scipy.linalg.block_diag(B_X_W, jnp.eye(n))

with data.switch_velocity_representation(VelRepr.Inertial):
W_v_WB = data.base_velocity()
B_Ẋ_W = -B_X_W @ jaxsim.math.Cross.vx(W_v_WB)

B_Ṫ_W = jax.scipy.linalg.block_diag(B_Ẋ_W, jnp.zeros(shape=(n, n)))

with data.switch_velocity_representation(VelRepr.Body):
M = free_floating_mass_matrix(model=model, data=data)

C = B_T_W.T @ (M @ B_Ṫ_W + C_B @ B_T_W)

return C

case VelRepr.Mixed:

n = model.dofs()
BW_H_B = data.base_transform().at[0:3, 3].set(jnp.zeros(3))
B_X_BW = jaxsim.math.Adjoint.from_transform(transform=BW_H_B, inverse=True)
B_T_BW = jax.scipy.linalg.block_diag(B_X_BW, jnp.eye(n))

with data.switch_velocity_representation(VelRepr.Mixed):
BW_v_WB = data.base_velocity()
BW_v_W_BW = BW_v_WB.at[3:6].set(jnp.zeros(3))

BW_v_BW_B = BW_v_WB - BW_v_W_BW
B_Ẋ_BW = -B_X_BW @ jaxsim.math.Cross.vx(BW_v_BW_B)

B_Ṫ_BW = jax.scipy.linalg.block_diag(B_Ẋ_BW, jnp.zeros(shape=(n, n)))

with data.switch_velocity_representation(VelRepr.Body):
M = free_floating_mass_matrix(model=model, data=data)

C = B_T_BW.T @ (M @ B_Ṫ_BW + C_B @ B_T_BW)

return C

case _:
raise ValueError(data.velocity_representation)


@jax.jit
def inverse_dynamics(
model: JaxSimModel,
Expand Down
90 changes: 90 additions & 0 deletions tests/test_api_model.py
Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@
import rod

import jaxsim.api as js
import jaxsim.math
from jaxsim import VelRepr

from . import utils_idyntree
Expand Down Expand Up @@ -319,6 +320,95 @@ def test_model_jacobian(
assert pytest.approx(JTf_inertial) == JTf_other, vel_repr.name


def test_coriolis_matrix(
jaxsim_models_types: js.model.JaxSimModel,
velocity_representation: VelRepr,
prng_key: jax.Array,
):

model = jaxsim_models_types

key, subkey = jax.random.split(prng_key, num=2)
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data = js.data.random_model_data(
model=model, key=subkey, velocity_representation=velocity_representation
)

# =====
# Tests
# =====

I_ν = data.generalized_velocity()
C = js.model.free_floating_coriolis_matrix(model=model, data=data)

h = js.model.free_floating_bias_forces(model=model, data=data)
g = js.model.free_floating_gravity_forces(model=model, data=data)
Cν = h - g

assert C @ I_ν == pytest.approx(Cν)

# Compute the free-floating mass matrix.
# This function will be used to compute the Ṁ with AD.
# Given q, computing Ṁ by AD-ing this function should work out-of-the-box with
# all velocity representations, that are handled internally when computing M.
def M(q) -> jax.Array:

data_ad = js.data.JaxSimModelData.zero(
model=model, velocity_representation=data.velocity_representation
)

data_ad = data_ad.reset_base_position(base_position=q[:3])
data_ad = data_ad.reset_base_quaternion(base_quaternion=q[3:7])
data_ad = data_ad.reset_joint_positions(positions=q[7:])

M = js.model.free_floating_mass_matrix(model=model, data=data_ad)

return M

def compute_q(data: js.data.JaxSimModelData) -> jax.Array:

q = jnp.hstack(
[data.base_position(), data.base_orientation(), data.joint_positions()]
)

return q

def compute_q̇(data: js.data.JaxSimModelData) -> jax.Array:

with data.switch_velocity_representation(VelRepr.Body):
B_ω_WB = data.base_velocity()[3:6]

with data.switch_velocity_representation(VelRepr.Mixed):
W_ṗ_B = data.base_velocity()[0:3]

W_Q̇_B = jaxsim.math.Quaternion.derivative(
quaternion=data.base_orientation(),
omega=B_ω_WB,
omega_in_body_fixed=True,
K=0.0,
).squeeze()

q̇ = jnp.hstack([W_ṗ_B, W_Q̇_B, data.joint_velocities()])

return q̇

# Compute q and q̇.
q = compute_q(data)
q̇ = compute_q̇(data)

# Compute Ṁ with AD.
dM_dq = jax.jacfwd(M, argnums=0)(q)
Ṁ = jnp.einsum("ijq,q->ij", dM_dq, q̇)

# We need to zero the blocks projecting joint variables to the base configuration
# for fixed-base models.
if not model.floating_base():
Ṁ = Ṁ.at[0:6, 6:].set(0)
Ṁ = Ṁ.at[6:, 0:6].set(0)

# Ensure that (Ṁ - 2C) is skew symmetric.
assert Ṁ - C - C.T == pytest.approx(0)


def test_model_fd_id_consistency(
jaxsim_models_types: js.model.JaxSimModel,
velocity_representation: VelRepr,
Expand Down
2 changes: 1 addition & 1 deletion tests/test_simulations.py
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Given the maximum magnitude of the force applied and the mass of the box, isn't this a bit too permissive?

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Here below the numbers of the failed test that triggered the increase of tolerance.

2024-06-10T12:49:55.8041107Z E       assert equals failed
2024-06-10T12:49:55.8041602Z E         �-Array([0.11897, 0.42528, 1.3108�  �+approx([0.11894265258451964 ± 1� 
2024-06-10T12:49:55.8042215Z E         �-7], dtype=float64)�               �+.2e-05, 0.42517935733540135 ± 4� 
2024-06-10T12:49:55.8042731Z E                                          �+.3e-05, 1.3109064638266603 ± 1.� 
2024-06-10T12:49:55.8043176Z E                                          �+3e-04])�

I had to increase the minimum error to 0.001 that is large but still ok. Not sure if you had a look at taking smaller steps in this test, I believe that the problem is not the tolerance but how the ground truth is computed.

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@flferretti flferretti Jun 11, 2024

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Alright, we can handle this in a different PR. It's strange that the tests were passing before this

Original file line number Diff line number Diff line change
Expand Up @@ -169,5 +169,5 @@ def test_box_with_zero_gravity(
assert data.base_position() == pytest.approx(
data0.base_position()
+ 0.5 * L_f[:, :3].squeeze() / js.model.total_mass(model=model) * tf**2,
rel=1e-4,
abs=1e-3,
)