Installation.zh TW

安裝手冊

環境所需

node.js >= 16
Java JDK >= 11
imagemagick
MongoDB >= 4

📢📢📢

您必須複製 opencv_java 函式庫至 JDK 的 lib 資料夾 (Windows 為 bin 資料夾)
Windows，請複製 opencv_java.dll，您可以在 models/DICOM/dcm4che/javaNode/dcm4chee/lib/windows-x86-64 找到此檔案
Linux，請複製 libclib_jiio.so 以及 libopencv_java.so，您可以在 models/DICOM/dcm4che/javaNode/dcm4chee/lib/linux-x86-64 找到這兩個檔案

安裝 Node.js 套件

⚠️ 請先進到 Raccoon-DICOM 專案目錄

npm install

設定

dotenv `.env`

您可以在專案根目錄找到 .env 檔案進行設定，並請您務必在實際環境使用較安全的設定
您可以直接複製 .env.template 並命名為 .env 進行修改

# MongoDB
MONGODB_NAME="raccoon-dicom"
MONGODB_HOSTS=["mongodb"]
MONGODB_PORTS=[27017]
MONGODB_USER="root"
MONGODB_PASSWORD="root"
MONGODB_AUTH_SOURCE="admin"
MONGODB_IS_SHARDING_MODE=false

# Server
SERVER_PORT=8081
SERVER_SESSION_SECRET_KEY="secret-key"

# DICOM Web
DICOM_STORE_ROOTPATH="/dicomFiles"
DICOMWEB_HOST="{host}"
DICOMWEB_PORT=8081
DICOMWEB_API="dicom-web"

# DICOM DIMSE
ENABLE_DIMSE=false
DIMSE_AE_TITLE="RACCOONQRSCP" # default: RACCOONQRSCP
DIMSE_HOSTNAME="0.0.0.0" # default: 127.0.0.1
DIMSE_PORT=11112 # default: 11112
DIMSE_MAX_PDULEN_RCV=16378
DIMSE_MAX_PDULEN_SND=16378
DIMSE_NOT_ASYNC=false
DIMSE_MAX_OPS_INVOKED=0
DIMSE_MAX_OPS_PERFORMED=0
DIMSE_NOT_PACK_PDV=false
DIMSE_CONNECT_TIMEOUT=0
DIMSE_REQUEST_TIMEOUT=0
DIMSE_ACCEPT_TIMEOUT=0
DIMSE_RELEASE_TIMEOUT=0
DIMSE_SEND_TIMEOUT=0
DIMSE_STORE_TIMEOUT=0
DIMSE_RESPONSE_TIMEOUT=0
DIMSE_RETRIEVE_TIMEOUT=0
DIMSE_RETRIEVE_TIMEOUT_TOTAL=0
DIMSE_IDLE_TIMEOUT=0
DIMSE_SOCLOSE_DELAY=50
DIMSE_SOSND_BUFFER=0
DIMSE_SORCV_BUFFER=0
DIMSE_TCP_DELAY=false

# DIMSE TLS
DIMSE_TLS=false
DIMSE_TLS_NULL=false
DIMSE_TLS_3DES=false
DIMSE_TLS_AES=false
DIMSE_TLS_CIPHER=""

DIMSE_TLS13=false
DIMSE_TLS12=false
DIMSE_TLS11=false
DIMSE_TLS1=false
DIMSE_SSL3=false
DIMSE_SSL2HELLO=false
DIMSE_TLS_PROTOCOL=""
DIMSE_TLS_EIA_HTTPS=false
DIMSE_TLS_EIA_LDAPS=false
DIMSE_TLS_NOAUTH=false
DIMSE_KEY_STORE="./config/certs/key.p12"
DIMSE_KEY_STORE_TYPE="PKCS12"
DIMSE_KEY_STORE_PASS="secret"
DIMSE_KEY_PASS="secret"
DIMSE_TRUST_STORE="./config/certs/cacerts.p12"
DIMSE_TRUST_STORE_TYPE="PKCS12"
DIMSE_TRUST_STORE_PASS="secret"

# FHIR
SYCN_TO_FHIR_SERVER=false
FHIRSERVER_BASE_URL="http://localhost:8088/fhir"

環境變數資訊

Field Name	Type of Value	Description
#MongoDB
MONGODB_NAME	string	MongoDB 資料庫名稱
MONGODB_HOSTS	array of strings	MongoDB 伺服器運行的主機名稱或 IP 位址列表。
MONGODB_PORTS	array of numbers	對應於 MONGODB_HOSTS 中指定的 MongoDB 伺服器的連接埠號列表。
MONGODB_USER	string	連接到 MongoDB 伺服器時要使用的使用者名稱
MONGODB_PASSWORD	string	連接到 MongoDB 伺服器時要使用的密碼
MONGODB_AUTH_SOURCE	string	要進行身份驗證的 MongoDB 資料庫名稱
MONGODB_IS_SHARDING_MODE	boolean	MongoDB 是否為 sharding 模式
#Server
SERVER_PORT	number	伺服器運行的埠(port)號
SERVER_SESSION_SECRET_KEY	string	用於 session 的保密金鑰
#DICOMweb
DICOM_STORE_ROOTPATH	string	存放 DICOM 檔案的根目錄
DICOMWEB_HOST	string	DICOM Web 伺服器的主機名稱。用於組合 00081190 (Retrieve URL)。您可以在字串中使用 {host}，它將替換為 request.headers.host
DICOMWEB_PORT	number	DICOM Web 伺服器運行的埠(port)號。用於組合 00081190 (Retrieve URL) e.g. 8088，將會產生 http://example.com:8088/dicom-web/studies
DICOMWEB_AE	string	設定要回傳的 Retrieve AE Title (0008,0054)，若 DIMSE 服務為開啟狀態，將優先使用 DIMSE 的 AE Title
#DIMSE
ENABLE_DIMSE	boolean	是否啟用 DICOM DIMSE 服務
DIMSE_AE_TITLE	string	DICOM DIMSE 的 Application Entity title (AETitle).
DIMSE_HOSTNAME	string	DICOM DIMSE 的 Hostname
DIMSE_PORT	number	DICOM DIMSE 的 port 號
DIMSE_MAX_PDULEN_RCV	number	specifies maximal length of received P-DATA TF PDUs communicated during association establishment. 0 indicates that no maximum length is specified. 16378 by default
DIMSE_MAX_PDULEN_SND	number	specifies maximal length of sent P-DATA-TF PDUs by this AE. The actual maximum length of sent P-DATA-TF PDUs is also limited by the maximal length of received P-DATA-TF PDUs of the peer AE communicated during association establishment. 16378 by default
DIMSE_NOT_ASYNC	boolean	do not use asynchronous mode; equivalent to --max-ops-invoked=1 and --max-ops-performed=1
DIMSE_MAX_OPS_INVOKED	number	maximum number of operations this AE may invoke asynchronously, unlimited by default
DIMSE_MAX_OPS_PERFORMED	number	maximum number of operations this AE may perform asynchronously, unlimited by default
DIMSE_NOT_PACK_PDV	boolean	send only one PDV in one P-Data-TF PDU; pack command and data PDV in one P-DATA-TF PDU by default
DIMSE_CONNECT_TIMEOUT	number	timeout in ms for TCP connect, no timeout by default
DIMSE_REQUEST_TIMEOUT	number	timeout in ms for receiving A-ASSOCIATE-RQ, no timeout by default
DIMSE_ACCEPT_TIMEOUT	number	timeout in ms for receiving A-ASSOCIATE-AC, no timeout by default
DIMSE_RELEASE_TIMEOUT	number	timeout in ms for receiving A-RELEASE-RP, no timeout by default
DIMSE_SEND_TIMEOUT	number	timeout in ms for sending other DIMSE RQs than C-STORE RQs, no timeout by default
DIMSE_STORE_TIMEOUT	number	timeout in ms for sending C-STOREsRQ, no timeout by default
DIMSE_RESPONSE_TIMEOUT	number	timeout in ms for receiving other outstanding DIMSE RSPs than C-MOVE or C-GET RSPs, no timeout by default
DIMSE_RETRIEVE_TIMEOUT	number	Timeout for retrieving DIMSE objects.
DIMSE_RETRIEVE_TIMEOUT_TOTAL	number	Total timeout for retrieving DIMSE objects.
DIMSE_IDLE_TIMEOUT	number	timeout in ms for aborting idle Associations, no timeout by default
DIMSE_SOCLOSE_DELAY	number	delay in ms after sending A-ASSOCATE-RJ, A-RELEASE-RQ or A-ABORT before the socket is closed; 50ms by default
DIMSE_SOSND_BUFFER	number	set SO_SNDBUF socket option to specified value
DIMSE_SORCV_BUFFER	number	set SO_RCVBUF socket option to specified value
DIMSE_TCP_DELAY	boolean	set TCP_NODELAY socket option to false, true by default
DIMSE_TLS	boolean	enable TLS connection without encryption or with AES or 3DES encryption; equivalent to --tls-cipher SSL_RSA_WITH_NULL_SHA --tls-cipher TLS_RSA_WITH_AES_128_CBC_SHA --tls-cipher SSL_RSA_WITH_3DES_EDE_CBC_SHA
DIMSE_TLS_NULL	boolean	enable TLS connection without encryption; equivalent to --tls-cipher SSL_RSA_WITH_NULL_SHA
DIMSE_TLS_3DES	boolean	enable TLS connection with 3DES encryption; equivalent to --tls-cipher SSL_RSA_WITH_3DES_EDE_CBC_SHA
DIMSE_TLS_AES	boolean	enable TLS connection with AES or 3DES encryption; equivalent to --tls-cipher TLS_RSA_WITH_AES_128_CBC_SHA --tls-cipher SSL_RSA_WITH_3DES_EDE_CBC_SHA
DIMSE_TLS_CIPHER	string	enable TLS connection with specified Cipher Suite. Multiple Cipher Suites may be enabled by multiple --tls-cipher options
DIMSE_TLS13	boolean	enable only TLS/SSL protocol TLSv1.3; equivalent to --tls-protocol TLSv1.3
DIMSE_TLS12	boolean	enable only TLS/SSL protocol TLSv1.2; equivalent to --tls-protocol TLSv1.2
DIMSE_TLS11	boolean	enable only TLS/SSL protocol TLSv1.1; equivalent to --tls-protocol TLSv1.1
DIMSE_TLS1	boolean	enable only TLS/SSL protocol TLSv1; equivalent to --tls-protocol TLSv1
DIMSE_SSL3	boolean	enable only TLS/SSL protocol SSLv3; equivalent to --tls-protocol SSLv3
DIMSE_SSL2HELLO	boolean	send/accept SSLv3/TLS ClientHellos encapsulated in a SSLv2 ClientHello packet; equivalent to --tls-protocol SSLv2Hello --tls-protocol SSLv3 --tls-protocol TLSv1 --tls-protocol TLSv1.1 --tls-protocol TLSv1.2
DIMSE_TLS_PROTOCOL	string	TLS/SSL protocol to use. Multiple TLS/SSL protocols may be enabled by multiple --tls-protocol options. Supported values by Java 11: TLSv1, TLSv1.1, TLSv1.2, TLSv1.3, SSLv3, SSLv2Hello. By default, only TLSv1.2 is enabled.
DIMSE_TLS_EIA_HTTPS	boolean	enable server endpoint identification according RFC 2818: HTTP Over TLS
DIMSE_TLS_EIA_LDAPS	boolean	enable server endpoint identification according RFC 2830: LDAP Extension for TLS
DIMSE_TLS_NOAUTH	boolean	disable client authentication for TLS
DIMSE_KEY_STORE	string	file path or URL of key store containing the private key, `config/certs/key.p12` by default
DIMSE_KEY_STORE_TYPE	string	type of key store containing the private key, PKCS12 by default
DIMSE_KEY_STORE_PASS	string	password for key store containing the private key, 'secret' by default
DIMSE_KEY_PASS	string	password for accessing the key in the key store, key store password by default
DIMSE_TRUST_STORE	string	file path of key store containing trusted certificates, `config/certs/cacerts.p12` by default
DIMSE_TRUST_STORE_TYPE	string	type of key store with trusted certificates, PKCS12 by default
DIMSE_TRUST_STORE_PASS	string	password for key store with trusted certificates, 'secret' by default

Plugins 設定

您必須在 plugins 資料夾中創建以及設定 config.js 檔案
您可以參考 config.template.js 進行修改
如果您不需要使用 plugin，您可以直接複製 config.template.js並命名為 config.js 即可

`plugins/config.js` 屬性資訊

👉 請參閱此文件

For for `plugins/config.js` Properties Info

👉 See this documentation

DIMSE APP

Raccoon-DICOM 使用 DCM4CHE QRSCP Tool 以提供 DIMSE 服務
您可以設定 ENABLE_DIMSE=true 以啟動 DICOM DIMSE 服務
Raccoon-dicom 將會為 DIMSE 服務自動產生 logback.xml 設定檔以進行日誌記錄的動作
Raccoon-dicom 的 DIMSE 服務設定除了 DIMSE_AE_TITLE、DIMSE_HOSTNAME 和 DIMSE_PORT 之外，其餘大多與 DCM4CHE 相同，若有需要請參考 dcm4che-tool-dcmqrscp / README.md

部屬

Local

運行以下指令部屬 Raccoon-DICOM

node server.js

Docker-compose

您也可以使用 Docker-compose 進行部屬
⚠️ 建議您先進行設定再進行部屬
運行以下指令部屬 Raccoon-DICOM

sudo docker compose up

Note 您可能會需要把 docker-compose.yaml 複製至另一個資料夾，並更改 raccoon.build.context 的路徑以防止在 volumes 當中映射過多資料 (i.e. mongodb, raccoon-storage)

Troubleshooting on linux

Unknown VR: Tag not found in data dictionary when using STOW-RS
- 您必須設定 DCMDICTPATH 環境變數
- dicom.dic 檔案可以在/usr/share/libdcmtk{version}或 ./models/DICOM/dcmtk/dicom.dic找到
{version} 對應到dcmtk的版本, e.g. 3.6.5 => libdcmtk15
- 使用指令設定 DCMDICTPATH 或者您可以將指令加入到profile檔案中(~/.bashrc,~/.profile etc.), example with dcmtk 3.6.5:
```
export DCMDICTPATH=/usr/share/libdcmtk15/dicom.dic
```
- 檢查環境變數
```
echo $DCMDICTPATH
```

Test

上傳影像 (STOW-RS)

以下將使用來自 test/dicomFiles/jpeg2000/example-jpeg-2000.dcm 的檔案做上傳測試
使用 curl 進行上傳

curl --location --request POST "http://localhost:8081/dicom-web/studies" ^
--header "Accept: application/dicom+json" ^
--header "Content-Type: multipart/related; type=\"application/dicom\"" ^
--form "[email protected]; type=application/dicom"

出現以下訊息則代表成功

{"00081190":{"vr":"UT","Value":["http://localhost:8081/dicom-web/studies/1.3.46.670589.45.1.1.4993912214784.1.5436.1538560373543"]},"00081198":{"vr":"SQ","Value":[]},"00081199":{"vr":"SQ","Value":[{"00081150":{"vr":"UI","Value":["1.2.840.10008.5.1.4.1.1.77.1.6"]},"00081155":{"vr":"UI","Value":["1.3.6.1.4.1.5962.99.1.3002151337.1017604488.1540600476073.6.0"]},"00081190":{"vr":"UT","Value":["http://localhost:8081/dicom-web/studies/1.3.46.670589.45.1.1.4993912214784.1.5436.1538560373543/series/1.3.46.670589.45.1.1.4993912214784.1.5436.1538560606509.3/instances/1.3.6.1.4.1.5962.99.1.3002151337.1017604488.1540600476073.6.0"]}}]}}

獲取影像資訊 (QIDO-RS)

開啟瀏覽器 or Postman
造訪 http://localhost:8081/dicom-web/studies 以取得 DICOM Json

調閱影像-Frame (WADO-RS)

您也可以測試 imagemagick 是否正常：造訪 http://localhost:8081/dicom-web/studies/1.3.46.670589.45.1.1.4993912214784.1.5436.1538560373543/series/1.3.46.670589.45.1.1.4993912214784.1.5436.1538560606509.3/instances/1.3.6.1.4.1.5962.99.1.3002151337.1017604488.1540600476073.6.0/frames/1/rendered?iccprofile=rommrgb 確認顏色是否變更

基礎

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🔧 安裝手冊
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- 👨‍💻 從 0 開始部屬 Raccoon - Linux

開發人員

🧪 測試流程

插件 (plugin)

DCMTK DIMSE

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Installation.zh TW

安裝手冊

環境所需

安裝 Node.js 套件

設定

dotenv `.env`

環境變數資訊

Plugins 設定

`plugins/config.js` 屬性資訊

For for `plugins/config.js` Properties Info

DIMSE APP

部屬

Local

Docker-compose

Troubleshooting on linux

Test

上傳影像 (STOW-RS)

獲取影像資訊 (QIDO-RS)

調閱影像-Frame (WADO-RS)

基礎

開發人員

插件 (plugin)

Clone this wiki locally

Installation.zh TW

安裝手冊

環境所需

安裝 Node.js 套件

設定

dotenv .env

環境變數資訊

Plugins 設定

plugins/config.js 屬性資訊

For for plugins/config.js Properties Info

DIMSE APP

部屬

Local

Docker-compose

Troubleshooting on linux

Test

上傳影像 (STOW-RS)

獲取影像資訊 (QIDO-RS)

調閱影像-Frame (WADO-RS)

基礎

開發人員

插件 (plugin)

Clone this wiki locally

dotenv `.env`

`plugins/config.js` 屬性資訊

For for `plugins/config.js` Properties Info