abide

ABIDE (Autism Brain Imaging Data Exchange)

Table of Contents

1. abide1
2. abide2

abide1

abide2

• N = 41 (TCD); N = 78 (NYU); N = 56 (IP)
• Data location: /host/oncilla/aibde2
• Subject information: $Data location/abide2.xlsx
  • Subject ID, Group (ASD1, CTL2), Age, Sex (M1, F2), Handedness, IQ, ADI, ADOS,...
• Anatomical data: $Data location/freesurfer/$SITE/$SUB_ID/surf
  • Freesurfer processed surface files
• Functional data: $Data location/freesurfer/$SITE/$SUB_ID/hcp_processed
  • HCP-style processed time dtseries file
• Diffusion data: $Data location/reinder/connectomes/$SITE/$SUB_ID
  • Connectome and edge length files for parcellations (schaefer 100-200, vosdewael 100-200)
• Load features
  • feat = mica_load_features(micasoftPath,DBName,SubjName,Mod,AtlasName);
  • Inputs

    micasoftPath: Full directory name of micasoft
    DBName: Name of the database (e.g., abide2)
    SubjName: Subject ID (e.g., 29177)
    Mod: Modality (e.g., struc, func, diff)
    AtlasName: Name of the parcellation (e.g., vos100, vos200, schaefer100, schaefer200)

  • Outputs

    feat: Output features
    If Mod = struc, curvature, sulcal depth, and thickness will be generated (feat.?_curv; feat.?_sulc; feat.?_thick)
    If Mod = func, time series mapped onto the atlas will be generated (feat)
    If Mod = diff, diffusion connectome and edge length matrices mapped onto the atlas will be generated (feat.connectome; feat.edgelength)

  • [Code request]: Ask to Bo-yong