d_hcp

Developmental HCP(dHCP)

Table of Contents

1. dHCP-release1
2. dHCP-release2

dHCP-release1

dHCP-release2

• N = 505
• Data location: /host/oncilla/dHCP_data/ORIGINAL_dHCP_DATA/dhcp-rel-2
• Subject information: $Data location/by9433_9_15_2019_16_45_34.csv
  • Subject ID
  • Sex (M/F)
  • Age at birth (in weeks)
  • Age at scan (in weeks)
  • MR Sessions (# of sessions. IF >1, the age at scan is the age at the second session)
  • Etc. (information whether there is missing data)
• Anatomical data: $Data location/dhcp_anat_pipeline/sub-?/ses-?/anat
  • Preprocessed T1w and T2w with their masks
  • Surfaces of white, midthickness, pial, and inflated
  • Surface features of curvature, sulcal depth, thickness, and myelin content
  • 5TT files
  • Parcellations (first, schaefer 100-400, vosdewael 100-200)
• Functional data: $Data location/dhcp_fmri_pipeline/sub-?/ses-?/func
  • Preprocessed rs-fMRI data with its mask
  • Time series mapped onto each parcellation (schaefer 100-400, vosdewael 100-200)
• Diffusion data: $Data location/dhcp_dmri_pipeline/sub-?/ses-?/dwi
  • Preprocessed DWI data with its mask
  • b-value and b-vector
  • Fiber orientation distributions and tissue response functions
  • Connectome and edge length files using each parcellation (schaefer 100-400, vosdewael 100-200)
• Load features
  • feat = mica_load_features(micasoftPath,DBName,SubjName,Mod,AtlasName);
  • Inputs

    micasoftPath: Full directory name of micasoft
    DBName: Name of the database (e.g., dHCP2)
    SubjName: Subject ID (e.g., CC00060XX03)
    Mod: Modality (e.g., struc, func, diff)
    AtlasName: Name of the parcellation (e.g., vos100, vos200, schaefer100, schaefer200, schaefer300, schaefer400)

  • Outputs

    feat: Output features
    If Mod = struc, curvature, sulcal depth, and thickness will be generated (feat.?_curv; feat.?_sulc; feat.?_thick)
    If Mod = func, time series mapped onto the atlas will be generated (feat)
    If Mod = diff, diffusion connectome and edge length matrices mapped onto the atlas will be generated (feat.connectome; feat.edgelength)

  • [Code request]: Ask to Bo-yong