a framework for training sequence-level deep learning networks

PANDORA 💻

A modular annotation tool for genomic variants

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

RADseq Data Exploration, Manipulation and Visualization using R

Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Phigaro is a scalable command-line tool for predicting phages and prophages

stackr: an R package to run stacks software pipeline

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Build DeepSea training dataset from raw data

Shiny app for making and annotating Volcano plots

Genome Contact Map Explorer - gcMapExplorer. Visit:

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

genomic alignment similarity search tool

Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.

Differential Privacy Protection against MembershipInference Attack on Machine Learning for Genomic Data

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

pCMF R package