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Wout Bittremieux edited this page May 23, 2025 · 22 revisions

Bioinformatics Hub at the ASMS 2025 Annual Conference

Overview

The Bioinformatics Hub is a place where bioinformaticians gather together with three aims:

  1. To provide their advice, knowledge, and support to anyone with a relevant question;
  2. To discuss current issues and challenges in mass spectrometry bioinformatics with the entire community;
  3. To work on interesting, synergistic projects and to freely exchange tools, algorithms and know-how with each other, across all labs, seniorities, and levels of experience.

Main meeting

Bioinformatics Hub schedule

The Bioinformatics Hub will be located at the Poster/Exhibit Hall. It is open each day during exhibit hall hours.

We have arranged discussions about special topics for certain time slots. There will be one or two facilitators to kick off a discussion with a short introduction to the topic, followed by open mic discussion. The current schedule of topics and facilitators are listed below:

Monday June 2

  • 10:30–12:30 [workshop] Attacking the crisis in confidence in metabolomic annotations: the Mass.Wiki resource (Oliver Fiehn)
  • 12:30–13:30 [discussion] Real-time mass spectrometry-based proteomics: Barriers, challenges and opportunities (Mathieu Lavallée-Adam, Devin Schweppe, Michael Hoopmann, Chris McGann)
  • 14:00–14:30 [AMA] Meet the bioinformatics team: MANA Software Data Exchange (Mingxun Wang)

Tuesday June 3

  • 10:30–12:30 [workshop] Bioinformatic platforms for metaproteomics research (Pratik Jagtap, Tim Van Den Bossche, Gelio Alves, Zhibin Ning, Robert Hettich)
  • 12:30–14:30 [discussion] FDR control: Pitfalls and opportunities (Bill Noble, Uri Keich)

Wednesday June 4

  • 10:30–12:30 [discussion] AI opportunities in metabolomics: MassSpecGym (Roman Bushuiev, Mingxun Wang) & AI opportunities in proteomics: MassNet and AI virtual cell (Wout Bittremieux, Tiannan Guo)
  • 12:30–13:30 [AMA] Meet the bioinformatics team: FragPipe (Fengchao Yu)
  • 13:30–14:30 [AMA] Meet the bioinformatics team: MetaMorpheus (Michael Shortreed, Nic Bollis, Alexander Solivais)

Thursday June 5

  • 10:30–11:30 [AMA] Meet the bioinformatics team: Casanovo & Cascadia (Will Fondrie, Justin Sanders), pi-HelixNovo & pi-PrimeNovo (Tianze Ling)
  • 11:10–12:30 [discussion] Beyond MZNext: Building MZPeak the next-generation raw file format (Sam Wein, Tim Van Den Bossche)
  • 12:30–14:30 [workshop] Decoding space: Integrating multiplexed imaging and Deep Visual Proteomics (Mariya Mardamshina, Marvin Thielert)

Attending Organizers:

  • Gelio Alves
  • Wout Bittremieux
  • Nic Bollis
  • Roman Bushuiev
  • Oliver Fiehn
  • Will Fondrie
  • Tiannan Guo
  • Robert Hettich
  • Michael Hoopmann
  • Pratik Jagtap
  • Uri Keich
  • Mathieu Lavallée-Adam
  • Tianze Ling
  • Mariya Mardamshina
  • Chris McGann
  • Alexey Nesvizhskii
  • Zhibin Ning
  • Bill Noble
  • Justin Sanders
  • Devin Schweppe
  • Michael Shortreed
  • Alexander Solivais
  • Marvin Thielert
  • Tim Van Den Bossche
  • Mingxun Wang
  • Sam Wein
  • Sue Weintraub
  • Fengchao Yu

Other Confirmed Participants

  • All others are welcome!

Visit us at http://compms.org/

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