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Eric Deutsch edited this page Sep 18, 2023 · 18 revisions

Bioinformatics Hub at the HUPO 2023 World Congress

Overview

The Bioinformatics Hub is a place where bioinformaticians gather together with three aims: (i) to provide their advice, knowledge, and support to anyone with a relevant question; (ii) to discuss current issues and challenges in proteomics informatics with the entire community; and (iii) to work on interesting, synergistic projects and to freely exchange tools, algorithms and know-how with each other, across all labs, seniorities and levels of experience.

Hashtags for Twitter

#BioinformaticsHub #HUPO2023

Main Congress

Bioinformatics Hub Schedule:

Listed times are Busan local time

Monday September 18:

  • 10h15-11h45: Session #M1 - Expanding the community around machine learning in proteomics (Magnus Palmblad, Dafni Skiadopoulou, Sandra Orchard)

  • 11h45-13h00: Session #M2 - Machine learning applications to immunopeptidomics analysis (Wout Bittremieux)

  • 14h30-15h35: Session #M3 - Approaches for identifying non-canonical ORFs (Eric Deutsch)

  • 15h35-16h30: Session #M4 - Human Proteome Project metrics and knowledge base (Lydie Lane, Eric Deutsch)

  • 16h30-17h35: Session #M5 - ProteomeXchange Data Repositories (Juan Antonio Vizcaino, Nuno Bandeira)

Tuesday September 19:

  • 10h15-11h45: Session #T1 - Approaches for identifying variant peptides (Marc Vaudel, Ksenia Kuznetsova, Magnus Palmblad)

  • 11h45-13h00: Session #T2 - Proteomics Standards Initiative (Sandra Orchard, Juan Antonio Vizcaino)

  • 14h30-15h35: Session #T3 - (note potential conflict with: Standardization and Harmonization)

  • 15h35-16h30: Session #T4 - Next generation MS run standard format development (Sam Wein, Oliver Kohlbacher)

  • 16h30-17h35: Session #T5 - (note potential conflict with: AI and MS Analysis)

Wednesday September 20:

  • 09h00-10h15: Session #W1 - Large pre-trained models for proteomics (Cheng Chang, Wen-Feng Zeng)

  • 10h15-11h45: Session #W2 - Real-time analysis of mass spectrometry-based proteomics data (Mathieu Lavallée-Adam)

  • 11h45-13h00: Session #W3 - Experiment annotation with SDRF (Tine Claeys, Peter Horvatovich)

  • 14h30-15h35: Session #W4 - (closed - concurrent bioinformatics session)

  • 15h30-16h00: Session #W5 - Meet the bioinformatics teams

Organizers:

  • Eric Deutsch
  • Tim van den Bossche
  • Juan Antonio Vizcaíno
  • Sandra Orchard
  • Magnus Palmblad
  • Lydie Lane
  • Sue Weintraub
  • Nuno Bandeira
  • Mathieu Lavallée-Adam
  • Cheng Chang
  • Alexey Nesvizhskii
  • Wout Bittremieux
  • Oliver Kohlbacher
  • Veit Schwämmle
  • Marc Vaudel
  • Mathias Wilhelm
  • Ralf Gabriels
  • Henning Hermjakob
  • Marie Locard-Paulet
  • David Bouyssié
  • Tine Claeys
  • Peter Horvatovich
  • All others are welcome!

Visit us at http://compms.org/

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