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Eric Deutsch edited this page Dec 7, 2022 · 24 revisions

Bioinformatics Hub at the HUPO 2022 World Congress

Overview

The Bioinformatics Hub is a place where bioinformaticians gather together with three aims: (i) to provide their advice, knowledge, and support to anyone with a relevant question; (ii) to discuss current issues and challenges in proteomics informatics with the entire community; and (iii) to work on interesting, synergistic projects and to freely exchange tools, algorithms and know-how with each other, across all labs, seniorities and levels of experience.

Hashtags for Twitter

#BioinformaticsHub #HUPO2022

Main Congress

Bioinformatics Hub Schedule:

Listed times are Cancun time

Monday December 5:

  • 09h00-10h00: Session #M1 - Machine learning in proteomics (Wout Bittremieux, Mathias Wilhelm)

  • 10h00-11h00: Session #M2 - Database search rescoring via deep learning predictions (Ralf Gabriels, Veit Schwämmle, Mathias Wilhelm, and Kevin Yang)

  • 11h00-12h00: Session #M3 - Proteomics Standards Initiative (Sandra Orchard, Juan Antonio Vizcaino)

  • 12h00-13h00: Session #M4 - European Bioinformatics Community for Mass Spectrometry - Introduction and ongoing projects (Marie Locard-Paulet, Veit Schwämmle, David Bouyssié, Ralf Gabriels, Tim van den Bossche)

  • 14h30-15h30: Session #M5 - PTMeXchange Consortium (Juan Antonio Vizcaino, Sandra Orchard)

  • 15h30-17h00: Session #M6 - Top-down proteomics software (Oliver Kohlbacher, Cheng Chang)

Tuesday December 6:

  • 09h00-10h00: Session #T1 - Modeling Protein Structure (Sameer Velankar)

  • 10h00-11h00: Session #T2 - HPP metrics and knowledge base (Lydie Lane, Gil Omenn)

  • 11h00-12h00: Session #T3 - Annotating translated smORFs in GENCODE (Jonathan Mudge, Eric Deutsch)

  • 12h00-13h00: Session #T4 - Implications of smORF detections for the HPP (Gil Omenn, Eric Deutsch)

  • 14h30-15h30: Session #T5 - Closed (concurrent HPP session)

  • 15h30-17h00: Session #T6 - Scalable workflows for data reuse and reproducible processing (Veit Schwämmle, David Bouyssié)

Wednesday December 7:

  • 09h00-10h00: Session #W1 - No Session

  • 10h00-11h00: Session #W2 - (Closed during Computational Proteomics concurrent session)

  • 11h00-11h45: Session #W3 - (Closed during Computational Proteomics concurrent session)

  • 11h45-13h00: Session #W4 - Meet the bioinformatics teams (Alexey Nesvizhskii, Henning Hermjakob, ...)

  • 14h30-15h30: Session #W5 - ProteomeXchange Data Repositories (Juan Antonio Vizcaino, Nuno Bandeira)

  • 15h30-16h00: Closing

Organizers:

  • Eric Deutsch
  • Juan Antonio Vizcaíno
  • Sandra Orchard
  • Lydie Lane
  • Sue Weintraub
  • Cheng Chang
  • Alexey Nesvizhskii
  • Wout Bittremieux
  • Oliver Kohlbacher
  • Veit Schwämmle
  • Mathias Wilhelm
  • Ralf Gabriels
  • Magnus Palmblad
  • Henning Hermjakob
  • Marie Locard-Paulet
  • David Bouyssié
  • Tim van den Bossche
  • Nuno Bandeira
  • All others are welcome!

Visit us at http://compms.org/

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