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HUPO 2025
The Bioinformatics Hub is a place where bioinformaticians gather together with three aims: (i) to provide their advice, knowledge, and support to anyone with a relevant question; (ii) to discuss current issues and challenges in proteomics informatics with the entire community; and (iii) to work on interesting, synergistic projects and to freely exchange tools, algorithms and know-how with each other, across all labs, seniorities and levels of experience.
Listed times are Toronto local time
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10h20-11h50: No Hub Session - Parallel with AI in Proteomics session
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13h45-15h15: Session #M1 - Turning in-house non-private MS-based proteomics data into AI-ready resources (Tiannan Guo, Wout Bittremieux, Yasset Perez-Riverol, Cheng Chang)
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15h15-16h20: Session #M2 - Missing Information: The Effect of Chemical Milieux in Protein Interactions and Extracting (In)Valuable Data from Publications with Responsible Biochemistry LLMs (Rodoniki Athanasiadou, Anton Feenstra, John LaCava)
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16h30-17h35: No Hub Session - Parallel with Computational Methods for Systems Biology
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10h20-11h50: Session #T1 - Is our proteomics data ready for AI? The PSI AI-readiness working group kick-off (Tine Claeys, Ralf Gabriels, Sam Wein)
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14h15-15h15: Session #T2 - De novo peptide sequencing: challenges and opportunities (Justin Sanders, William Noble, Wout Bittremieux, Devanshi Desai)
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15h15-16h20: Session #T3 - mzPeak: Designing a Scalable, Interoperable, and Future-Ready Mass Spectrometry Data Format (Tim Van Den Bossche, Oliver Kohlbacher, Samuel Wein)
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16h30-17h35: No Hub Session - Parallel with Data integration and computational methods for Systems Biology
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10h20-11h50: Session #W1 - Practical strategies for using Human Protein Atlas data in your analysis pipeline (María Bueno Álvez, Emmanouil Apostolakis, Emil Johansson, Josefin Kenrick)
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13h30-15h00: Session #W2 - ProteoBench: a community-curated platform for comparison of proteomics data analysis workflows (Robbe Devreese, Caroline Jachmann, Sam Van Puyenbroeck, Christian Panse)
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15h15-16h20: Session #W3 - Proteogenomic data integration approach for identification of protein variants (Peter Horvatovich, Beata Szeitz, Samuel Wein)
- Eric Deutsch
- Mathieu Lavallée-Adam
- Tim van den Bossche
- Juan Antonio Vizcaíno
- Sandra Orchard
- Magnus Palmblad
- Lydie Lane
- Sue Weintraub
- Nuno Bandeira
- Cheng Chang
- Alexey Nesvizhskii
- Wout Bittremieux
- Oliver Kohlbacher
- Veit Schwämmle
- Marc Vaudel
- Mathias Wilhelm
- Ralf Gabriels
- Henning Hermjakob
- Marie Locard-Paulet
- David Bouyssié
- Tine Claeys
- Peter Horvatovich
- All others are welcome!
Visit us at http://compms.org/