Report Modules: panoply_immune_analysis_report

panoply_immune_analysis_report

Description

This module creates an interactive R Markdown report of the panoply_immune_analysis module. xCell scores are shown in an annotated heatmap and compared to ESTIMATE scores in interactive scatter plots. Significant (defined by FDR value given in panoply_immune_analysis) results, if any, of enrichment analysis using Fisher's exact test between immune subtypes and annotation groups are shown in an interactive table.

Input

Required inputs:

• tar_file: (.tar file) output tar file containing results from panoply_immune_analysis
• yaml_file: (.yaml file) master parameters file
• label: (String) directory name within the tar file

Output

• report_out: (.html file) Interactive R Markown report.