Support Modules: panoply_check_yaml_default

panoply_check_yaml_default

Description

This internal support module is used to check a parameter value within the provided YAML, returning a boolean TRUE/FALSE value. The module assumes that the parameter is a boolean, and that the parameter is in the first level of nesting. It is used to determine whether a module should be run or skipped in a workflow setting; for instance, panoply_main_internal uses this module to check the notebook-set parameter run_ptmsea, to determine if PTM-SEA should be run on phosphoproteome data.

Input

Required inputs:

• yaml: (.yaml file) master-parameters.yaml
• param_lookup: (String) name of parameter in YAML to be searched.

Optional inputs:

• param: (String) Current (Terra set) parameter value. If set, the YAML value will be ignored.

Output

• param_boolean: Boolean value of YAML parameter (or param override)