Support Modules: panoply_accumulate

panoply_accumulate

Description

This module assembles results from association analysis (primarily panoply_association and clustering) to run panoply_ssgsea on the fold change(s) for each class vector, to provide additional biological insight into the differential markers for the class.

Input

Required inputs:

• input_tar: (.tar file) tarball from panoply_association
• module: (String) panoply analysis module name (usually panoply_association)

Optional inputs:

• analysisDir: (String, default = 'input_tarball') name of analysis directory
• output_tar: (String, default = "panoply_contrasts.tar") output .tar file name

Output

• outputs: Tarball containing results of module assembled into appropriate gct files for executing panoply_ssgsea.
• list_gct: Array format with all GCT files to scatter panoply_ssgsea across